Pierre de Buyl's homepage

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Journal papers

1. Out-of-equilibrium mean-field dynamics of a model for wave-particle interaction
   P. de Buyl, D. Fanelli, R. Bachelard and G. De Ninno
   Physical Review Special Topics - Accelerators and Beams 12, 060704 (2009)
   doi - arXiv:0902.0712
2. Numerical resolution of the Vlasov equation for the Hamiltonian Mean-Field model
   P. de Buyl
   Communications in Nonlinear Science and Numerical Simulation 15, 2133-2139 (2010)
   doi - arXiv:0905.3647
3. Experimental perspectives for systems based on long-range interactions
   R. Bachelard, T. Manos, P. de Buyl, F. Staniscia, F. Cataliotti, G. De Ninno, D. Fanelli and N. Piovella
   Journal of Statistical Mechanics: Theory and Experiment (2010) P06009
   doi - arXiv:1004.4963
4. Models with short and long-range interactions: phase diagram and reentrant phase
   T. Dauxois, P. de Buyl, L. Lori and S. Ruffo
   Journal of Statistical Mechanics: Theory and Experiment (2010) P06015
   doi - arXiv:1004.1458
5. A digital oscilloscope setup for the measurement of a transistor's characteristic curves
   P. de Buyl
   American Journal of Physics 78, 1425-1429 (2010)
   doi arXiv:1006.0954
6. Statistical mechanics of collisionless relaxation in a noninteracting system
   P. de Buyl, D. Mukamel and S. Ruffo
   Philosophical Transactions of the Royal Society A 369, 439-452 (2011)
   doi - arXiv:1006.2768
7. Self-consistent steady states in Hamiltonian mean field dynamics
   P. de Buyl, D. Mukamel and S. Ruffo
   Physical Review E 84, 061151 (2011)
   doi - arXiv:1012.2594
8. Effectiveness of mixing in violent relaxation
   P. de Buyl and P. Gaspard
   Physical Review E 84, 061139 (2011)
   doi - arXiv:1108.0728
9. Phase transitions of quasistationary states in the Hamiltonian Mean Field model
   P. de Buyl, D. Fanelli and S. Ruffo
   Central European Journal of Physics 10, 652-659 (2012)
   doi - arXiv:1112.1101
10. Phoretic self-propulsion: a mesoscopic description of reaction dynamics that powers motion
    P. de Buyl and R. Kapral
    Nanoscale 5, 1337-1344 (2013)
    doi - arXiv:1209.6319
11. Absence of thermalization for systems with long-range interactions coupled to a thermal bath
    P. de Buyl, G. De Ninno, D. Fanelli, C. Nardini, A. Patelli, F. Piazza and Y. Y. Yamaguchi
    Physical Review E 87, 042110 (2013)
    doi - arXiv:1211.2528
12. H5MD: a structured, efficient, and portable file format for molecular data
    P. de Buyl, P. H. Colberg and F. Höfling
    Computer Physics Communications 185, 1546–1553 (2014)
    doi - arXiv:1308.6382
13. Self-propulsion through symmetry breaking
    P. de Buyl, A. S. Mikhailov and R. Kapral
    EPL (Europhysics Letters) 103, 60009 (2013)
    doi - arXiv:1401.1360
14. The vmf90 program for the numerical resolution of the Vlasov equation for mean-field systems
    P. de Buyl
    Computer Physics Communications 185, 1822–1827 (2014)
    doi - arXiv:1310.0805
15. A parallel algorithm for step- and chain-growth polymerization in Molecular Dynamics
    P. de Buyl and E. Nies
    The Journal of Chemical Physics 142, 134102 (2015)
    doi - arXiv:1409.7498
16. Generalized maximum entropy approach to quasi-stationary states in long range systems
    Gabriele Martelloni, Gianluca Martelloni, Pierre de Buyl and Duccio Fanelli
    Physical Review E 93, 022107 (2016)
    doi - arXiv:1507.05166
17. Driving-induced stability with long-range effects
    Urna Basu, Pierre de Buyl, Christian Maes and Karel Netočný
    EPL (Europhysics Letters) 115, 30007 (2016)
    doi - arXiv:1604.00798
18. RMPCDMD: Simulations of colloids with coarse-grained hydrodynamics, chemical reactions and external fields
    Pierre de Buyl, Mu-Jie Huang and Laurens Deprez
    Journal of Open Research Software (JORS) 5, 3 (2017)
    doi - arXiv:1608.04904
19. Passive and active colloidal chemotaxis in a microfluidic channel: mesoscopic and stochastic models
    Laurens Deprez and Pierre de Buyl
    Soft Matter 13, 3532-3543 (2017)
    doi - arXiv:1701.05020
20. Sustainable computational science: the ReScience initiative
    Nicolas P. Rougier, Konrad Hinsen, Frédéric Alexandre, Thomas Arildsen, Lorena Barba, Fabien C. Y. Benureau, C. Titus Brown, Pierre de Buyl, Ozan Caglayan, Andrew P. Davison, Marc André Delsuc, Georgios Detorakis, Alexandra K. Diem, Damien Drix, Pierre Enel, Benoît Girard, Olivia Guest, Matt G. Hall, Rafael Neto Henriques, Xavier Hinaut, Kamil S Jaron, Mehdi Khamassi, Almar Klein, Tiina Manninen, Pietro Marchesi, Dan McGlinn, Christoph Metzner, Owen L. Petchey, Hans Ekkehard Plesser, Timothée Poisot, Karthik Ram, Yoav Ram, Etienne Roesch, Cyrille Rossant, Vahid Rostami, Aaron Shifman, Joseph Stachelek, Marcel Stimberg, Frank Stollmeier, Federico Vaggi, Guillaume Viejo, Julien Vitay, Anya Vostinar, Roman Yurchak, Tiziano Zito
    PeerJ Computer Science 3:e142 (2017)
    doi - arXiv:1707.04393
21. Mesoscopic simulations of anisotropic chemically-powered nanomotors
    Pierre de Buyl
    Physical Review E 100, 022603 (2019) doi - arXiv:1802.03264
22. tidynamics: A tiny package to compute the dynamics of stochastic and molecular simulations
    Pierre de Buyl
    Journal of Open Source Software 3(28), 877 (2018)
    doi
23. Lees–Edwards boundary conditions for translation invariant shear flow: Implementation and transport properties
    Sebastian Bindgen, Florian Weik, Rudolf Weeber, Erin Koos, and Pierre de Buyl
    Physics of Fluids 33, 083615 (2021)
    doi - arXiv:2104.12857
24. Brownian motion in a growing population of ballistic particles
    Nathaniel V. Mon Père, Pierre de Buyl, and Sophie de Buyl
    Physical Review E 105, 034133 (2022)
    doi - arXiv:2110.11315
25. Precursor-free eruption triggered by edifice rupture at Nyiragongo volcano D. Smittarello, B. Smets, J. Barrière, C. Michellier, A. Oth, T. Shreve, R. Grandin, N. Theys, H. Brenot, V. Cayol, P. Allard, C. Caudron, O. Chevrel, F. Darchambeau, P. de Buyl, L. Delhaye, D. Derauw, G. Ganci, H. Geirsson, E. Kamate Kaleghetso, J. Kambale Makundi, I. Kambale Nguomoja, C. Kasereka Mahinda, M. Kervyn, C. Kimanuka Ruriho, H. Le Mével, S. Molendijk, O. Namur, S. Poppe, M. Schmid, J. Subira, C. Wauthier, M. Yalire, N. d’Oreye, F. Kervyn, and A. Syavulisembo Muhindo
    Nature 609, 83-88 (2022)
    doi

Conference contributions

1. Ensemble Inequivalence In A XY Model With Long-Range Interactions
   P. de Buyl, D. Mukamel and S. Ruffo
   AIP Conference Proceedings 800 (UNSOLVED PROBLEMS OF NOISE AND FLUCTUATIONS), 533 (2005)
   doi
2. Transition de phases hors-d'équilibre dans le Laser à Electrons Libres
   P. de Buyl, R. Bachelard, M.-E. Couprie, G. De Ninno and D. Fanelli
   Comptes-Rendus de la 12ème Rencontre du Non-Linéaire, Non-Linéaire Publications (2009)
   link
3. Deep saturation dynamics in a Free-Electron Laser
   R. Bachelard, M.-E. Couprie, P. de Buyl, G. De Ninno and D. Fanelli
   Proceedings of the FEL09 Conference, Liverpool (2009)
   link
4. Out-of-Equilibrium Dynamics in Systems with Long-Range Interactions: Characterizing Quasi-stationary States
   P. de Buyl
   Proceedings of the European Conference on Complex Systems 2012, T. Gilbert, M. Kirkileonis and G. Nicolis editors (Springer International Publishing, 2013) pp. 117-121.
   link - doi
5. The Hierarchical Data Format (HDF): A Foundation for Sustainable Data and Software
   T. Habermann, A. Collette, S. Vincena, J. J. Billings, M. Gerring, P. de Buyl, K. Hinsen, W. Benger, F. RNC Maia and S. Byna
   Submitted to the 2nd Workshop on Sustainable Software for Science: Practice and Experiences WSSSPE2.
   doi

Editorial work

1. Proceedings of the 6th European Conference on Python in Science (EuroSciPy 2013)
   P. de Buyl and N. Varoquaux editors (2014)
   arXiv:1405.0166v1
2. Proceedings of the 7th European Conference on Python in Science (EuroSciPy 2014)
   P. de Buyl and N. Varoquaux editors (2014)
   arXiv:1412.7030v1.