You will find on this page computer software and documentation, including slides from computer-related seminars.
The software for my nanomotor and chemically active colloids simulations. Open-source and available at https://github.com/pdebuyl-lab/RMPCDMD
The specification is found here and has been presented in P. de Buyl, P. Colberg and F. Höfling, H5MD: A structured, efficient, and portable file format for molecular data, Comp. Phys. Comm. (2014) - [arXiv:1308.6382].
pyMPCD is a hydrodynamical simulation module in Python/Fortran. The code is available on GitHub https://github.com/pdebuyl/pyMPCD
vmf90 is a software for the numerical resolution of the Vlasov equation. The code is available on GitHub https://github.com/pdebuyl/vmf90 and has been presented in P. de Buyl, The vmf90 program for the numerical resolution of the Vlasov equation for mean-field systems , Comp. Phys. Comm. (2014) - [arXiv.org:1310.0805].
ParseText is a small Fortran 95 library that allows to parse simple text files. If your files looks like
alpha = 1.41d0 N = 128
you can use the following in your Fortran code
alpha = PTread_d(CF,'alpha') N = PTread_i(CF,'N')
CF is the data structure of ParseText,
PTread_d allows to read double
PTread_i is for integer. Other kinds are provided.